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  2023 (23)
An Investigation of the Representation of Social Determinants of Health in the UMLS. Rawat, B. P. S.; Keating, H.; Goodwin, R.; Druhl, E.; and Yu, H. AMIA Annual Symposium Proceedings, 2022: 912–921. April 2023.
An Investigation of the Representation of Social Determinants of Health in the UMLS [link]Paper   link   bibtex   abstract  
H4H: A Comprehensive Repository of Housing Resources for Homelessness. Osebe, S.; Tsai, J.; and Hong, Y. AMIA Summits on Translational Science Proceedings, 2023: 427–437. June 2023.
H4H: A Comprehensive Repository of Housing Resources for Homelessness [link]Paper   link   bibtex   abstract  
Multi-label Few-shot ICD Coding as Autoregressive Generation with Prompt. Yang, Z.; Kwon, S.; Yao, Z.; and Yu, H. Proceedings of the ... AAAI Conference on Artificial Intelligence. AAAI Conference on Artificial Intelligence, 37(4): 5366–5374. June 2023.
Multi-label Few-shot ICD Coding as Autoregressive Generation with Prompt [link]Paper   doi   link   bibtex   abstract  
Evaluating the Efficacy of NoteAid on EHR Note Comprehension among US Veterans through Amazon Mechanical Turk. Lalor, J. P.; Wu, H.; Mazor, K. M.; and Yu, H. International journal of medical informatics, 172: 105006. April 2023.
Evaluating the Efficacy of NoteAid on EHR Note Comprehension among US Veterans through Amazon Mechanical Turk [link]Paper   doi   link   bibtex  
Associations Between Natural Language Processing–Enriched Social Determinants of Health and Suicide Death Among US Veterans. Mitra, A.; Pradhan, R.; Melamed, R. D.; Chen, K.; Hoaglin, D. C.; Tucker, K. L.; Reisman, J. I.; Yang, Z.; Liu, W.; Tsai, J.; and Yu, H. JAMA Network Open, 6(3). March 2023. Publisher: American Medical Association
Associations Between Natural Language Processing–Enriched Social Determinants of Health and Suicide Death Among US Veterans [link]Paper   doi   link   bibtex   abstract  
Intentional Self-Harm Among US Veterans With Traumatic Brain Injury or Posttraumatic Stress Disorder: Retrospective Cohort Study From 2008 to 2017. Rawat, B. P. S.; Reisman, J.; Pogoda, T. K; Liu, W.; Rongali, S.; Aseltine Jr, R. H; Chen, K.; Tsai, J.; Berlowitz, D.; Yu, H.; and Carlson, K. F JMIR Public Health and Surveillance, 9: e42803. July 2023.
Intentional Self-Harm Among US Veterans With Traumatic Brain Injury or Posttraumatic Stress Disorder: Retrospective Cohort Study From 2008 to 2017 [link]Paper   doi   link   bibtex   abstract  
Context Variance Evaluation of Pretrained Language Models for Prompt-based Biomedical Knowledge Probing. Yao, Z.; Cao, Y.; Yang, Z.; and Yu, H. AMIA Summits on Translational Science Proceedings, 2023: 592–601. June 2023.
Context Variance Evaluation of Pretrained Language Models for Prompt-based Biomedical Knowledge Probing [link]Paper   link   bibtex   abstract  
Extracting Biomedical Factual Knowledge Using Pretrained Language Model and Electronic Health Record Context. Yao, Z.; Cao, Y.; Yang, Z.; Deshpande, V.; and Yu, H. AMIA Annual Symposium Proceedings, 2022: 1188–1197. April 2023.
Extracting Biomedical Factual Knowledge Using Pretrained Language Model and Electronic Health Record Context [link]Paper   link   bibtex   abstract  
TransformEHR: transformer-based encoder-decoder generative model to enhance prediction of disease outcomes using electronic health records. Yang, Z.; Mitra, A.; Liu, W.; Berlowitz, D.; and Yu, H. Nature Communications, 14: 7857. November 2023.
TransformEHR: transformer-based encoder-decoder generative model to enhance prediction of disease outcomes using electronic health records [link]Paper   doi   link   bibtex   abstract   1 download  
NoteChat: A Dataset of Synthetic Doctor-Patient Conversations Conditioned on Clinical Notes. Wang, J.; Yao, Z.; Yang, Z.; Zhou, H.; Li, R.; Wang, X.; Xu, Y.; and Yu, H. October 2023. Number: arXiv:2310.15959 arXiv:2310.15959 [cs]
NoteChat: A Dataset of Synthetic Doctor-Patient Conversations Conditioned on Clinical Notes [link]Paper   link   bibtex   abstract  
Performance of Multimodal GPT-4V on USMLE with Image: Potential for Imaging Diagnostic Support with Explanations. Yang, Z.; Yao, Z.; Tasmin, M.; Vashisht, P.; Jang, W. S.; Ouyang, F.; Wang, B.; Berlowitz, D.; and Yu, H. November 2023. Pages: 2023.10.26.23297629
Performance of Multimodal GPT-4V on USMLE with Image: Potential for Imaging Diagnostic Support with Explanations [link]Paper   doi   link   bibtex   abstract   1 download  
SELF-EXPLAIN: Teaching Large Language Models to Reason Complex Questions by Themselves. Zhao, J.; Yao, Z.; Yang, Z.; and Yu, H. November 2023. Number: arXiv:2311.06985 arXiv:2311.06985 [cs] R0-FoMo: Workshop on Robustness of Few-shot and Zero-shot Learning in Foundation Models at NeurIPS 2023.
SELF-EXPLAIN: Teaching Large Language Models to Reason Complex Questions by Themselves [link]Paper   link   bibtex   abstract  
BioInstruct: Instruction Tuning of Large Language Models for Biomedical Natural Language Processing. Tran, H.; Yang, Z.; Yao, Z.; and Yu, H. November 2023. Number: arXiv:2310.19975 arXiv:2310.19975 [cs]
BioInstruct: Instruction Tuning of Large Language Models for Biomedical Natural Language Processing [link]Paper   doi   link   bibtex   abstract   1 download  
EHRTutor: Enhancing Patient Understanding of Discharge Instructions. Zhang, Z.; Yao, Z.; Zhou, H.; ouyang , F.; and Yu, H. October 2023. To appear in NeurIPS'23 Workshop on Generative AI for Education (GAIED), December, New Orleans
EHRTutor: Enhancing Patient Understanding of Discharge Instructions [link]Paper   doi   link   bibtex   abstract  
Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization. Mishra, P.; Yao, Z.; Chen, S.; Wang, B.; Mittal, R.; and Yu, H. October 2023. NeurIPS 2023 Workshop SyntheticData4ML Accepted
Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization [link]Paper   link   bibtex   abstract  
Improving Summarization with Human Edits. Yao, Z.; Schloss, B. J.; and Selvaraj, S. P. December 2023. EMNLP 2023
Improving Summarization with Human Edits [link]Paper   link   bibtex   abstract   1 download  
PaniniQA: Enhancing Patient Education Through Interactive Question Answering. Cai, P.; Yao, Z.; Liu, F.; Wang, D.; Reilly, M.; Zhou, H.; Li, L.; Cao, Y.; Kapoor, A.; Bajracharya, A.; Berlowitz, D.; and Yu, H. Transactions of the Association for Computational Linguistics. August 2023. Equal contributions for the first two authors.
PaniniQA: Enhancing Patient Education Through Interactive Question Answering [link]Paper   link   bibtex   abstract  
Revisiting the Architectures like Pointer Networks to Efficiently Improve the Next Word Distribution, Summarization Factuality, and Beyond. Chang, H.; Yao, Z.; Gon, A.; Yu, H.; and McCallum, A. July 2023. ACL 2023, equal contribution from the first two authors.
Revisiting the Architectures like Pointer Networks to Efficiently Improve the Next Word Distribution, Summarization Factuality, and Beyond [link]Paper   link   bibtex   abstract  
Automated identification of eviction status from electronic health record notes. Yao, Z.; Tsai, J.; Liu, W.; Levy, D. A; Druhl, E.; Reisman, J. I; and Yu, H. Journal of the American Medical Informatics Association,ocad081. May 2023.
Automated identification of eviction status from electronic health record notes [link]Paper   doi   link   bibtex   abstract  
Buprenorphine use and courses of care for opioid use disorder treatment within the Veterans Health Administration. Gordon, A. J.; Saxon, A. J.; Kertesz, S.; Wyse, J. J.; Manhapra, A.; Lin, L. A.; Chen, W.; Hansen, J.; Pinnell, D.; Huynh, T.; Baylis, J. D.; Cunningham, F. E.; Ghitza, U. E.; Bart, G.; Yu, H.; and Sauer, B. C. Drug and Alcohol Dependence, 248: 109902. July 2023.
Buprenorphine use and courses of care for opioid use disorder treatment within the Veterans Health Administration [link]Paper   doi   link   bibtex   abstract  
Vision Meets Definitions: Unsupervised Visual Word Sense Disambiguation Incorporating Gloss Information. Kwon, S.; Garodia, R.; Lee, M.; Yang, Z.; and Yu, H. In Toronto Canada, July 2023. ACL 2023
link   bibtex  
Generating User-Engaging News Headlines. Cai, P.; Song, K.; Cho, S.; Wang, H.; Wang, X.; Yu, H.; Liu, F.; and Yu, D. In Toronto, Canada, July 2023. ACL 2023
link   bibtex  
Web Information Extraction for Social Good: Food Pantry Answering As an Example. Chen, H.; and Yu, H. In Austin, TX, May 2023. ACM The Web Conference 2023, Austin TX
doi   link   bibtex   abstract  
  2022 (21)
ScAN: Suicide Attempt and Ideation Events Dataset. Rawat, B. P. S.; Kovaly, S.; Pigeon, W. R.; and Yu, H. Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting, 2022: 1029–1040. July 2022.
ScAN: Suicide Attempt and Ideation Events Dataset [link]Paper   doi   link   bibtex   abstract  
Knowledge Injected Prompt Based Fine-tuning for Multi-label Few-shot ICD Coding. Yang, Z.; Wang, S.; Rawat, B. P. S.; Mitra, A.; and Yu, H. Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing, 2022: 1767. December 2022. Publisher: NIH Public Access
Knowledge Injected Prompt Based Fine-tuning for Multi-label Few-shot ICD Coding [link]Paper   link   bibtex   abstract  
Learning as Conversation: Dialogue Systems Reinforced for Information Acquisition. Cai, P.; Wan, H.; Liu, F.; Yu, M.; Yu, H.; and Joshi, S. In Carpuat, M.; de Marneffe, M.; and Meza Ruiz, I. V., editor(s), Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, pages 4781–4796, Seattle, United States, July 2022. Association for Computational Linguistics
Learning as Conversation: Dialogue Systems Reinforced for Information Acquisition [link]Paper   doi   link   bibtex   abstract